If you want to use the Dolphin emulator, you should also add the following option to the same file to get Cfg to write games as.
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See the Configurable Options page for information on how to do this. If using an NTFS drive, you need to add the following options to config.txt or meta.xml. Also, Cfg has some problems with case sensitivity when using NTFS drives. This is the choice you want to make if you want to rip games for use with the Dolphin emulator as well as play them from the hard drive.
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Unfortunately, other OSes do not have full compatibility for this format and it is not currently compatible with GCN games. It allows for large files and is quite fast.
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NTFS is a Windows drive format standard and Windows probably formatted your drive this way if you use it. GParted or any other partitioning application can also be used. If you wish to format a drive to FAT32, this tool is recommended if you are using Windows (the partitioning application that comes with Windows won't create a FAT32 partition of a large enoguh size). Most external drives come formatted as FAT32 and do not need to be reformatted for use with the loader. Your Wii games need to be installed to either a FAT partition or a WBFS partition on the drive. This won't affect games as they are automatically split, but perhaps it might affect other files you want to save on the same partition The only real negative is that it has a file size limit of 4GB. This format type is supported by all operating systems. It can store any Wii games and you can store other files on the same partition if you like.
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This is the most compatible format type and is required if you want to install GCN games. If you do want to format to WBFS for some reason, you can use the GParted tool to prepare your drive for formatting to WBFS with Cfg. These drives are very rare, but other format types may not work on these drives. There is one minor benefit in WBFS that it supports drives with a sector size of 4k. There are slight instabilities when deleting games on drives of this format and you cannot use the partition to store other files (i.e., it can only store Wii games). This is a format type created specifically for Wii games, however it is no longer recommended. The following sections will provide some info about each format type and why you might want to use it or not use it, as well as information on how to prepare your drive for that format if you do want to use it. If you want to play GCN games with DIOS MIOS, you must choose FAT32. If you want to use the Dolphin emulator, you should use NTFS, but otherwise it is recommended that you use FAT32. As of the v62 series, that partition can be formatted as WBFS, FAT32, NTFS or EXT. You will install your games onto a partition of the hard drive (or an SD/SDHC card).